PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016433629.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 827aa    MW: 91565.1 Da    PI: 8.2456
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016433629.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-18322422199
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++
  XP_016433629.1 322 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 414
                     99**************************555567778***************9989999999***9.********************876.8888 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     l+++++++
  XP_016433629.1 415 LLMGFRKA 422
                     88888765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-29314427IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-19319421IPR015300DNA-binding pseudobarrel domain
CDDcd100172.63E-22320421No hitNo description
SMARTSM010191.9E-20322423IPR003340B3 DNA binding domain
PROSITE profilePS5086311.152322423IPR003340B3 DNA binding domain
PfamPF023626.0E-16322422IPR003340B3 DNA binding domain
PROSITE profilePS5105014.054586636IPR011124Zinc finger, CW-type
PfamPF074961.3E-9591633IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MDSKICMNGV CGATSSIEWK KGWPLKSGEF AYLCDKCGTA YEQLGFCDLF HSEDTGWREC  60
ISCGKRLHCG CIASSSLLEL LDSGGINCVG CARSCQLHAT PNHVKAKAFG TSNSNSVGET  120
PSTSLGSQMN GSEPKKREGS DGVDPVLVLP HQNGNTNKPI GQIKMEEAFH PAGESGCTFS  180
SNLCQASAES SKNVKLDSYN GYIGVNEIHG SQVQTNLSIA LSAPSPNTKL FPATVDEGDL  240
NKRISSLQQG SRSRSLLPKP PKSTSAVRSE TNAGIISQIR VARPPVEGRI KNQLLPRYWP  300
RITDQELQQI SGDSNSTIIP LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR  360
IQDVKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLLMGFR  420
KASTVNSTQE TRLSAIPKSV FSTEPTSFSA MPENLPLMSG YSGLLQSFKG SRESSMNLSS  480
KHFNSGDFSW YLTEKNEGRN ADGTFSPSMP VSDRKRSRNI GSKSKRLLID SDEALELKLS  540
WEELQDMLRP PLSIQPTTVT IEDHEFEEYE QPPVLGKRSI FTVRFSGEQE QWAQCDNCFK  600
WRRLPADYLL PPQWTCQDNI FYHSRCSCSV PDDLTSRELE YLLKMDKDLK KRRNAAGQRT  660
AQAHDSSDLD SHANGTGVAG DVRERGATSV ATTTKHPRHR PGCSCIVCIQ PPSGKGKHNP  720
TCTCNVCLTV KRRFKTLMMR KKKRQSEREA EIGQRNQLMW SSKEETEVDS FSRQVKPEAD  780
PSDRERSGSE TLARGHSSNQ LQKLPETTSK SSARDISEAE WSNKLSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-1632142313118DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1645652DKDLKKRR
2730741KRRFKTLMMRKK
3730743KRRFKTLMMRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016433629.10.0PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X2
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLK4D1U50.0K4D1U5_SOLLC; Uncharacterized protein
STRINGSolyc10g075030.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1